Page Comparison

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• Macs and Linux have Terminal programs built-in – find it now on your computer
• Windows needs help
  • Putty – http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html
    
    • simple Terminal and file copy programs
    • download either the Putty installer (https://the.earth.li/~sgtatham/putty/latest/w64/putty-64bit-0.70-installer.msi)
      • or putty.exe (terminal) and pscp.exe (secure copy client)
  • Windows Subsystem for Linux – Windows 10 Professional includes a Ubuntu-like bash shells
    • See https://docs.microsoft.com/en-us/windows/wsl/install-win10
    • We recommend the Ubuntu Linux distribution, but any Linux distribution will have an SSH client
  • Cygwin – http://www.cygwin.com/
    
    • A full Linux environment, including X-windows for running GUI programs remotely
    • Complicated to install

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mkdir -p ~/local/bin
cd ~/local/bin
ln -s -f /work/projects/BioITeam/common/bin/launcher_creator.py
ln -s -f /work/projects/BioITeam/ls5/opt/cutadapt-1.10/bin/cutadapt
ln -s -f /work/projects/BioITeam/ls5/opt/multiqc-1.0/multiqc
ln -s -f /work/projects/BioITeam/ls5/opt/samstat-1.09/samstat

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