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- Macs and Linux have Terminal programs built-in – find it now on your computer
- Windows needs help
- Putty – http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html
- simple Terminal and file copy programs
- download either the Putty installer (https://the.earth.li/~sgtatham/putty/latest/w64/putty-64bit-0.70-installer.msi)
- or putty.exe (terminal) and pscp.exe (secure copy client)
- Windows Subsystem for Linux – Windows 10 Professional includes a Ubuntu-like bash shells
- See https://docs.microsoft.com/en-us/windows/wsl/install-win10
- We recommend the Ubuntu Linux distribution, but any Linux distribution will have an SSH client
- Cygwin – http://www.cygwin.com/
- A full Linux environment, including X-windows for running GUI programs remotely
- Complicated to install
- Putty – http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html
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- your local Terminal
- the remote Shell
There are many shell programs available in Linux, but the default is bash (Bourne-again shell).
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The ln -s command creates a symbolic link, a shortcut to the linked file or directory.
Want to know where a link points to? Use ls with the -l (long listing) option.
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mkdir -p ~/local/bin cd ~/local/bin ln -s -f /work/projects/BioITeam/common/bin/launcher_makercreator.py ln -s -f /work/projects/BioITeam/ls5/opt/cutadapt-1.10/bin/cutadapt ln -s -f /work/projects/BioITeam/ls5/opt/multiqc-1.0/multiqc ln -s -f /work/projects/BioITeam/ls5/opt/samstat-1.09/samstat |
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