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bash Miniconda3-latest-Linux-x86_64.sh
logout
#log back in using the ssh command.
conda config --set auto_activate_base false |
Following the installation prompts you will need to:
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logout
#log back in using the ssh command.
conda config --set auto_activate_base false
conda config --set channel_priority strict |
For help with the ssh command please refer back to Windows10 or MacOS tutorials. If you log out and back in 1 more time, what do you notice is different?
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More information about "channels" can be found here.
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By the end of this course you may find that the 'bioconda' channel is full of lots of programs you want to use, and may choose to permanently add it to your list of channels so the above command |
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channels: |
For now, use the error message you saw above to try to install the fastqc program yourself.
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In previous years, the pip installation program was used to install a few programs. While those programs will be installed through conda this year, the link here is provided to give a detailed walk through of how to use pip on TACC resources. This is particularly helpful for making use of the '--user' flag during the installation process as you do not have the expected permissions to install things in the default directories.
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