Title: Linux and stampede2 Setup -- GVA2023  
Owner: Deatherage, Daniel E
Creator: Deatherage, Daniel E Jun 17, 2023
Last Changed by: Deatherage, Daniel E Jun 17, 2023
Tiny Link: (useful for email) https://cloud.wikis.utexas.edu/wiki/x/DkbYAg
Export As: Word · PDF  
Bioinformatics Team (BioITeam) at the University of Texas (4)
    Page: fastp - GVA2023
    Page: Genome Variant Analysis Course 2023
    Page: GVA2023 Day 1 Environment Checkup and Catchup
    Page: Stampede2 Breseq Tutorial GVA2023
Labels
There are no labels assigned to this page.
Time Editor  
Jun 17, 2023 23:03 Deatherage, Daniel E View Changes
Jun 17, 2023 22:21 Deatherage, Daniel E View Changes
Jun 17, 2023 20:05 Deatherage, Daniel E View Changes
Jun 17, 2023 20:04 Deatherage, Daniel E View Changes
Jun 17, 2023 17:36 Deatherage, Daniel E  
Outgoing Links
External Links (22)
    https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
    https://www.barebones.com/products/bbedit/
    https://utexas.atlassian.net/wiki/display/bioiteam/Linux+an…
    cyberduck.ch/
    https://github.com/
    https://linuxconfig.org/bash-prompt-basics
    https://docs.conda.io/en/latest/miniconda.html
    https://conda.io/projects/conda/en/latest/user-guide/instal…
    fetchsoftworks.com/
    https://conda.io/projects/conda/en/latest/user-guide/concep…
    osxfuse.github.com/
    https://www.tacc.utexas.edu/systems/corral
    https://www.educative.io/edpresso/anaconda-vs-miniconda
    notepad-plus-plus.org/download/v6.1.5.html
    https://anaconda.org/bioconda/fastqc
    https://code.visualstudio.com/docs/remote/ssh
    www.activestate.com/komodo-edit/downloads
    https://conda.io/projects/conda/en/latest/user-guide/tasks/…
    https://en.wikipedia.org/wiki/E._coli_long-term_evolution_e…
    macfusionapp.org/
    https://utbox.utexas.edu/
    https://conda.io/projects/conda/en/latest/user-guide/concep…
Bioinformatics Team (BioITeam) at the University of Texas (6)     Page: Accessing stampede2 (ssh on MacOs)
    Page: Copying files from TACC to your personal computer.
    Page: Accessing stampede2 (ssh on Windows10)
    Page: Genome Variant Analysis Course 2023
    Page: Linux and Lonestar 5 Setup
    Page: Linux and stampede2 Setup -- GVA2023