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We wish to acknowledge a great deal of help with creating these web pages and materials from previous instructors of the Intro to NGS Bioinformatics course taught in 2013 and the Genome Variant Analysis Course taught in 2014-2016 (feel free to look through old materials at any point). Two individuals warrant special mention, the former director of the GSAF Scott Hunicke-Smith, and Jeffrey Barrick were the driving force behind this class for a number of years, and many of the tutorials presented here were developed by them or adapted from their work. |
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Tutorial: Advanced Breseq
Tutorial: Evaluating Evaluating Error Correction Using Breseq
Human and Higher Eukaryote Centric Tutorials
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Tutorial: Annovar Analysis
Tutorial: Comparing Comparing Multiple samples
Method based Tutorials that may be of help regardless of sample type
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Tutorial: Exome Capture Metrics
Tutorial: Error Error Correction (Molecular Indexing)
Thursday May 25th. Day 4 – User specific tutorials (continued) and TACC the normal way
The first half of today's class will be done as a continuation of tutorials that you are most interested in. As was the case yesterday, choose your own tutorial, and please don't hesitate to ask us what tutorials would be good for you to be working on given your data! After the break, we will be go over a brief review to put things back in prospective and give you a tutorial on how to do things the 'normal way' on TACC which means using the job submission system and commands files before giving you the rest of the time to go through tutorials and ask any remaining questions.