Title: Genome Variant Analysis Course 2021  
Owner: Deatherage, Daniel E
Creator: Deatherage, Daniel E Jun 08, 2021
Last Changed by: Deatherage, Daniel E Jun 18, 2021
Tiny Link: (useful for email) https://cloud.wikis.utexas.edu/wiki/x/gCvYAg
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Bioinformatics Team (BioITeam) at the University of Texas (26)
    Page: Accessing stampede2 via ssh on MacOs
    Page: Accessing stampede2 via ssh on Windows10
    Page: Advanced bowtie2 -- GVA2021
    Page: Advanced breseq GVA2021
    Page: Analyzing Annovar Annotation Output -- GVA2021
    Page: Bedtools tutorial -- GVA2021
    Page: Breseq with multiple references GVA2021
    Page: Evaluating and processing raw sequencing data GVA2021
    Page: Exome Capture Metrics GVA2021
    Page: Genome Analysis Toolkit (GATK) . -- GVA2021
    Page: Genome Assembly (SPAdes) -- GVA2021
    Page: GVA2021 - Class Review
    Page: Human Trios -- GVA2021
    Page: IGV Tutorial -- GVA2021
    Page: Launching an iDev session GVA2021
    Page: Linux and stampede2 Setup -- GVA2021
    Page: Molecular Index Error correction GVA2021
    Page: MultiQC - fastQC summary tool -- GVA2021
    Page: Novel DNA Identification -- GVA2021
    Page: Read Mapping with bowtie2 Tutorial GVA2021
    Page: Running Annovar 2021
    Page: Single Nucleotide Variant (SNV) calling Tutorial GVA2021
    Page: SSCS vs Trimmed Read Variant calls GVA2021
    Page: Stampede2 Breseq Tutorial GVA2021
    Page: Structural Variant (SV) calling with SVdetect 2021
    Page: Trimmomatic - GVA2021
Hierarchy
Children (30)
    Page: Accessing stampede2 via ssh on MacOs
    Page: Accessing stampede2 via ssh on Windows10
    Page: Advanced bowtie2 -- GVA2021
    Page: Advanced breseq GVA2021
    Page: Analyzing Annovar Annotation Output -- GVA2021
    Page: Annovar Annotations -- GVA2021
    Page: Bedtools tutorial -- GVA2021
    Page: Breseq with multiple references GVA2021
    Page: Copying files from TACC to your personal computer.
    Page: Day 1 Environment Checkup and Catchup
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Time Editor  
Jun 18, 2021 06:05 Deatherage, Daniel E View Changes
Jun 18, 2021 05:36 Deatherage, Daniel E View Changes
Jun 17, 2021 18:23 Deatherage, Daniel E View Changes
Jun 17, 2021 11:23 Deatherage, Daniel E View Changes
Jun 17, 2021 11:14 Deatherage, Daniel E  
Outgoing Links
External Links (4)
    barricklab.org/
    https://barricklab.org/twiki/bin/view/Lab
    https://utexas.atlassian.net/wiki/display/GSAF/About+Us#Sco…
    https://www.tacc.utexas.edu/
Bioinformatics Team (BioITeam) at the University of Texas (27)     Page: MultiQC - fastQC summary tool -- GVA2021
    Page: Read Mapping with bowtie2 Tutorial GVA2021
    Page: Running Annovar 2021
    Page: Bedtools tutorial -- GVA2021
    Page: Molecular Index Error correction GVA2021
    Page: Day 1 Environment Checkup and Catchup
    Page: Linux and stampede2 Setup -- GVA2021
    Page: Accessing stampede2 via ssh on Windows10
    Page: SSCS vs Trimmed Read Variant calls GVA2021
    Page: Structural Variant (SV) calling with SVdetect 2021
    Page: Trimmomatic - GVA2021
    Page: Novel DNA Identification -- GVA2021
    Page: Evaluating and processing raw sequencing data GVA2021
    Page: Genome Assembly (SPAdes) -- GVA2021
    Page: Single Nucleotide Variant (SNV) calling Tutorial GVA2021
    Page: Analyzing Annovar Annotation Output -- GVA2021
    Page: IGV Tutorial -- GVA2021
    Page: Advanced bowtie2 -- GVA2021
    Page: Breseq with multiple references GVA2021
    Page: Accessing stampede2 via ssh on MacOs
    Page: Genome Variant Analysis Course 2021
    Page: Stampede2 Breseq Tutorial GVA2021
    Page: Advanced breseq GVA2021
    Page: GVA2021 - Class Review
    Page: Exome Capture Metrics GVA2021
    Page: Human Trios -- GVA2021
    Page: Genome Analysis Toolkit (GATK) . -- GVA2021