Title: Read Mapping with bowtie2 Tutorial GVA2023  
Owner: Deatherage, Daniel E
Creator: Deatherage, Daniel E Jun 17, 2023
Last Changed by: Deatherage, Daniel E Jun 22, 2023
Tiny Link: (useful for email) https://cloud.wikis.utexas.edu/wiki/x/rEbYAg
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Bioinformatics Team (BioITeam) at the University of Texas (13)
    Page: Advanced breseq GVA2023
    Page: Bedtools tutorial -- GVA2023
    Page: Breseq with multiple references GVA2023
    Page: Genome Analysis Toolkit (GATK) . -- GVA2023
    Page: Genome Variant Analysis Course 2023
    Page: GVA2023 Day 1 Environment Checkup and Catchup
    Page: Human Trios -- GVA2023
    Page: IGV Tutorial -- GVA2023
    Page: Molecular Index Error correction GVA2023
    Page: Novel DNA Identification -- GVA2023
    Page: Single Nucleotide Variant (SNV) calling Tutorial GVA2023
    Page: Stampede2 Breseq Tutorial GVA2023
    Page: Structural Variant (SV) calling with SVdetect 2023
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Time Editor  
Jun 22, 2023 13:20 Deatherage, Daniel E View Changes
Jun 20, 2023 21:17 Deatherage, Daniel E View Changes
Jun 20, 2023 09:59 Deatherage, Daniel E View Changes
Jun 17, 2023 22:18 Deatherage, Daniel E  
Outgoing Links
External Links (21)
    https://metacpan.org/dist/BioPerl/view/bin/bp_seqconvert
    https://en.wikipedia.org/wiki/List_of_sequence_alignment_so…
    https://conda-forge.org/
    bowtie-bio.sourceforge.net/bowtie2/manual.shtml
    www.ncbi.nlm.nih.gov/nuccore/NC_012967.1
    bp_seqconvert.pl
    stampede2.tacc.utexas.edu
    https://anaconda.org/
    https://anaconda.org/bioconda/bowtie2
    sourceforge.net/projects/bowtie-bio/files/bowtie2/
    https://utexas.atlassian.net/wiki/pages/viewpage.action?pag…
    https://anaconda.org/bioconda/bwa
    www.ncbi.nlm.nih.gov/pubmed/19838166
    www.ncbi.nlm.nih.gov/sra
    https://portal.tacc.utexas.edu/user-guides/stampede2#progra…
    samtools.sourceforge.net/SAM1.pdf
    www.ebi.ac.uk/ena/data/view/SRR030257&display=html
    https://www.biostars.org/p/345331/
    https://sourceforge.net/projects/bowtie-bio/files/bowtie2/
    genome.sph.umich.edu/wiki/SAM
    SeqIO.pm
Bioinformatics Team (BioITeam) at the University of Texas (7)     Page: Evaluating and processing raw sequencing data GVA2023
    Page: Launching an iDev session GVA2023
    Page: Mapping tutorial (bowtie2, bwa) (GVA14)
    Page: Mapping tutorial
    Page: Genome Variant Analysis Course 2023
    Page: Read Mapping with bowtie2 Tutorial GVA2023
    Page: Mapping with bowtie2 Tutorial