Page Information

Title:	Mapping tutorial (bowtie2, bwa) (GVA14)
Owner:	Jeffrey E Barrick
Creator:	Jeffrey E Barrick	May 16, 2014
Last Changed by:	Jeffrey E Barrick	May 19, 2014
Tiny Link: (useful for email)	https://cloud.wikis.utexas.edu/wiki/x/1FTYAg
Export As:	Word · PDF

Incoming Links

Bioinformatics Team (BioITeam) at the University of Texas (11)
Page: Genome Variant Analysis Course 2014
Page: IGV Tutorial
Page: Integrative Genomics Viewer (IGV) tutorial (GVA14)
Page: Mapping with bowtie2 Tutorial
Page: Read Mapping with bowtie2 Tutorial
Page: Read Mapping with bowtie2 Tutorial 2017
Page: Read Mapping with bowtie2 Tutorial GVA2019
Page: Read Mapping with bowtie2 Tutorial GVA2020
Page: Read Mapping with bowtie2 Tutorial GVA2021
Page: Read Mapping with bowtie2 Tutorial GVA2022
Page: Read Mapping with bowtie2 Tutorial GVA2023

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Recent Changes

Time	Editor
May 19, 2014 11:00	Jeffrey E Barrick	View Changes
Migrated to Confluence 5.3
May 19, 2014 11:00	Jeffrey E Barrick	View Changes
May 18, 2014 06:33	Jeffrey E Barrick	View Changes
May 18, 2014 06:25	Jeffrey E Barrick	View Changes
May 18, 2014 06:21	Jeffrey E Barrick

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Outgoing Links

External Links (15)

sourceforge.net/projects/bowtie-bio/files/bowtie2/

sourceforge.net/projects/bio-bwa/files/

www.ncbi.nlm.nih.gov/pubmed/19838166

en.wikipedia.org/wiki/FASTQ_format

www.ncbi.nlm.nih.gov/nuccore/NC_012967.1

samtools.sourceforge.net/SAM1.pdf

bio-bwa.sourceforge.net/bwa.shtml

genome.sph.umich.edu/wiki/SAM

en.wikipedia.org/wiki/List_of_sequence_alignment_software#S…

www.ebi.ac.uk/ena/data/view/SRR030257&display=html

en.wikipedia.org/wiki/GenBank

http//bowtie-bio.sourceforge.net/bowtie2/

maq.sourceforge.net/

www.ncbi.nlm.nih.gov/sra

bio-bwa.sourceforge.net/

Bioinformatics Team (BioITeam) at the University of Texas (4) Page: Integrative Genomics Viewer (IGV) tutorial (GVA14)
Page: Genome Variant Analysis Course 2014
Page: SNV calling tutorial (GVA14)
Page: Mapping tutorial