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Title:	Mapping with bowtie2 Tutorial
Owner:	Deatherage, Daniel E
Creator:	Deatherage, Daniel E	May 22, 2015
Last Changed by:	Deatherage, Daniel E	May 27, 2015
Tiny Link: (useful for email)	https://cloud.wikis.utexas.edu/wiki/x/N1bYAg
Export As:	Word · PDF

Bioinformatics Team (BioITeam) at the University of Texas (10)     Page: Genome Variant Analysis Course 2015     Page: Human Trios     Page: Read Mapping with bowtie2 Tutorial     Page: Read Mapping with bowtie2 Tutorial 2017     Page: Read Mapping with bowtie2 Tutorial GVA2019     Page: Read Mapping with bowtie2 Tutorial GVA2020     Page: Read Mapping with bowtie2 Tutorial GVA2021     Page: Read Mapping with bowtie2 Tutorial GVA2022     Page: Read Mapping with bowtie2 Tutorial GVA2023     Page: Single Nucleotide Variant (SNV) calling Tutorial

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Time	Editor
May 27, 2015 10:41	Deatherage, Daniel E	View Changes
May 27, 2015 05:18	Deatherage, Daniel E	View Changes
May 25, 2015 08:54	Deatherage, Daniel E	View Changes
May 22, 2015 13:54	Deatherage, Daniel E	View Changes
May 22, 2015 13:49	Deatherage, Daniel E

External Links (11)
    www.ncbi.nlm.nih.gov/nuccore/NC_012967.1
    www.ebi.ac.uk/ena/data/view/SRR030257&display=html
    samtools.sourceforge.net/SAM1.pdf
    sourceforge.net/projects/bowtie-bio/files/bowtie2/
    en.wikipedia.org/wiki/List_of_sequence_alignment_software#S…
    www.ncbi.nlm.nih.gov/pubmed/19838166
    bp_seqconvert.pl
    http//bowtie-bio.sourceforge.net/bowtie2/
    https://utexas.atlassian.net/wiki/pages/viewpage.action?pag…
    genome.sph.umich.edu/wiki/SAM
    www.ncbi.nlm.nih.gov/sra

Bioinformatics Team (BioITeam) at the University of Texas (5)     Page: Mapping tutorial     Page: Genome Variant Analysis Course 2014     Page: Genome Variant Analysis Course 2015     Page: Linux and Lonestar refresher     Page: Mapping tutorial (bowtie2, bwa) (GVA14)