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Overview

MultiQC is a tool for aggregating NGS QC reports. It does not produce reports, just combines them for unified visualization.

MultiQC "knows" the report formats of many existing NGS tools: FastQC, cutadapt, bowtie2, tophat, STAR, kallisto, HISAT2, samtools, featureCounts, HTSeq, MACS2, Picard, GATK … and more!

It can also be configured to display other data via two straightforward steps:

  1. format the data appropriately (e.g. tab-delimited text files)
  2. create appropriate custom data entries in a multiqc_config.yaml configuration file

MultiQC produces neat, interactive plots in an HTML file. So it can be used as a basic plotting tool for many kinds of reports and data, not just those produced by NGS tools!

References

Main MultiQC links

MultiQC configuration files

MultiQC Custom data support

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