BME 383J Course Content
Your Instructors
Name |
Initials |
Affiliation |
Expertise |
---|---|---|---|
SPHS |
Director GSAF |
Everything, if loosely defined (but especially |
|
JF |
Research Associate, TACC Life Sciences |
high performance computing |
|
Matt Vaughn |
MWV |
Manager, TACC Life Sciences |
in absentia |
Jeff Barrick |
|
Asst. Prof. Biochemistry |
in absentia |
Tuesday Nov. 6th
- Introduction to next-gen sequencing technologies (SPHS - 15 minutes)
- Intro to TACC/Linux (JF - 15 minutes)
- About TACC
- Getting Started at TACC
- If you are new to Linux, there are some basics here, and some tips, techniques, and practice exercises here.
- Introduction to mapping presentation (SHS - 45 minutes)
- Side content: what's this all about? Check out this short wiki page on genome variants
Thursday Nov. 8th
- Mapping & Variant calling
- Mapping theory (SPHS)
- http://last.cbrc.jp/mcf-kyoto08.pdf
- http//www.cs.utsa.edu%2F~jruan%2Fteaching%2FCS6293_fall_2010%2Fslides%2Fslide5_shortreadmapping.ppt
- Mapping & variant calling practice - haploid (bacteria) (JF)
- Variant calling (homework)
- Mapping theory (SPHS)
Tuesday Nov. 13th
- Results of variant calling
- SNP Annotation
- Reference databases