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java -Xmx4g -Djava.io.tmpdir=/tmp -jar /work/01866/phr254/gshare/Tools_And_Programs/bin/CalculateHsMetrics.jar BI=/work/01866/phr254/gshare/data/hg19/target_intervals.reduced.withhead.intervallist TI=/work/01866/phr254/gshare/data/hg19/target_intervals.reduced.withhead.intervallist I=DEG03_01.merged.realigned.marked2.bam O=DEG03_01.picard.stats R=/work/01866/phr254/gshare/data/hg19/bwa0.5.4_index_cs/Homo_sapiens.GRCh37.60.dna.fasta PER_TARGET_COVERAGE=DEG03_01.picard.pertarget.stats

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