This page and its subpages serve as a preliminary user guide for PyReconstruct, an extensible successor to RECONSTRUCT™ written from the ground up in Python. Please have a look at the source code on our lab's GitHub site. Question can be directed toward PyReconstruct's primary developers, Julian Falco (julian.falco@utexas.edu) and Michael Chirillo (m.chirillo@utexas.edu).
You can navigate around this wiki by clicking the links below or the links in the sidebar to the left.
List and list operations
Series operations
Meta-data
Miscellaneous
Basics
Installation
- Launching
- Starting new series
Images
- Change img dir
- Convert to zarr
Main window
List / List-operations
- Regular expressions
- Section lists / operations
- Trace list / tags
- Object list / groups
- Z-trace list
3D scene
3D Scene stuff...
Series operations
Calibration
This stuff about calibration...
Alignments
This stuff about alignments...
Importing / exporting
- Traces
- Aligments
- Palettes
- Exporting back to legacy
Propagation operations
This stuff about propagating
Meta-data
Commenting / Flags
Curating
Miscellaneous
Extra stuff here...