Title: Genome Variant Analysis Course 2022  
Owner: Deatherage, Daniel E
Creator: Deatherage, Daniel E Jun 13, 2022
Last Changed by: Deatherage, Daniel E Jun 24, 2022
Tiny Link: (useful for email) https://cloud.wikis.utexas.edu/wiki/x/pDjYAg
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Bioinformatics Team (BioITeam) at the University of Texas (29)
    Page: Accessing stampede2 (ssh on MacOs)
    Page: Accessing stampede2 (ssh on Windows10)
    Page: Accessing stampede2 via ssh on MacOs GVA2022
    Page: Accessing stampede2 via ssh on Windows10 GVA 2022
    Page: Advanced bowtie2 -- GVA2022
    Page: Advanced bowtie2 -- GVA2023
    Page: Advanced breseq GVA2022
    Page: Annotating plasmids with pLannotate
    Page: Annovar 2022
    Page: Bedtools tutorial -- GVA2022
    Page: Breseq with multiple references GVA2022
    Page: Evaluating and processing raw sequencing data GVA2022
    Page: Exome Capture Metrics GVA2022
    Page: fastp - GVA2022
    Page: Genome Analysis Toolkit (GATK) . -- GVA2022
    Page: Genome Assembly (SPAdes) -- GVA2022
    Page: GVA2022 - Class Review
    Page: Human Trios -- GVA2022
    Page: IGV Tutorial -- GVA2022
    Page: Launching an iDev session GVA2022
    Page: Linux and stampede2 Setup -- GVA2022
    Page: Molecular Index Error correction GVA2022
    Page: MultiQC - fastQC summary tool -- GVA2022
    Page: Novel DNA Identification -- GVA2022
    Page: Read Mapping with bowtie2 Tutorial GVA2022
    Page: Single Nucleotide Variant (SNV) calling Tutorial GVA2022
    Page: SSCS vs Trimmed Read Variant calls GVA2022
    Page: Stampede2 Breseq Tutorial GVA2022
    Page: Structural Variant (SV) calling with SVdetect 2022
Hierarchy
Children (29)
    Page: Accessing stampede2 via ssh on MacOs GVA2022
    Page: Accessing stampede2 via ssh on Windows10 GVA 2022
    Page: Advanced bowtie2 -- GVA2022
    Page: Advanced breseq GVA2022
    Page: Annotating plasmids with pLannotate
    Page: Annovar 2022
    Page: Bedtools tutorial -- GVA2022
    Page: Breseq with multiple references GVA2022
    Page: Evaluating and processing raw sequencing data GVA2022
    Page: Exome Capture Metrics GVA2022
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Time Editor  
Jun 24, 2022 08:51 Deatherage, Daniel E View Changes
Jun 24, 2022 08:50 Deatherage, Daniel E View Changes
Jun 24, 2022 01:31 Deatherage, Daniel E View Changes
Jun 24, 2022 01:00 Deatherage, Daniel E View Changes
Jun 23, 2022 10:22 Deatherage, Daniel E  
Outgoing Links
External Links (8)
    https://utexas.atlassian.net/wiki/display/GSAF/About+Us#Sco…
    https://barricklab.org/twiki/bin/view/Lab
    https://www.tacc.utexas.edu/
    https://utexas.atlassian.net/wiki/display/bioiteam/Bedtools…
    https://utexas.atlassian.net/wiki/display/bioiteam/Stampede…
    https://utexas.atlassian.net/wiki/display/bioiteam/IGV+Tuto…
    https://utexas.atlassian.net/wiki/download/attachments/4772…
    barricklab.org/
Bioinformatics Team (BioITeam) at the University of Texas (25)     Page: Genome Variant Analysis Course 2022
    Page: Launching an iDev session GVA2022
    Page: Single Nucleotide Variant (SNV) calling Tutorial GVA2022
    Page: Breseq with multiple references GVA2022
    Page: Evaluating and processing raw sequencing data GVA2022
    Page: Accessing stampede2 via ssh on MacOs GVA2022
    Page: Structural Variant (SV) calling with SVdetect 2022
    Page: Read Mapping with bowtie2 Tutorial GVA2022
    Page: Genome Assembly (SPAdes) -- GVA2022
    Page: GVA2022 - Class Review
    Page: GVA2022 Day 1 Environment Checkup and Catchup
    Page: Novel DNA Identification -- GVA2022
    Page: fastp - GVA2022
    Page: Molecular Index Error correction GVA2022
    Page: Advanced breseq GVA2022
    Page: MultiQC - fastQC summary tool -- GVA2022
    Page: Linux and stampede2 Setup -- GVA2022
    Page: SSCS vs Trimmed Read Variant calls GVA2022
    Page: Annotating plasmids with pLannotate
    Page: Advanced bowtie2 -- GVA2022
    Page: Annovar 2022
    Page: Genome Analysis Toolkit (GATK) . -- GVA2022
    Page: Accessing stampede2 via ssh on Windows10 GVA 2022
    Page: Human Trios -- GVA2022
    Page: Exome Capture Metrics GVA2022