Logging in

After logging into stampede2 (powershell and terminal tutorials if you need help remembering how to do this).

.bashrc

You should see the following prompt:

tacc:~$

If you do it means you successfully have copied and activated the .bashrc file which controls a number of variables.

If you see something else use this link to jump to the section of the tutorial that dealt with the .bashrc file

Setting up your profile

conda

Activate a conda environment

conda activate GVA-fastqc

If your prompt now changes to:

(GVA-fasqc) tacc:~$

It means you have successfully installed miniconda and created your first environment.

If you see something different use the following link to jump to the section dealing with downloading and installing conda and continue until you have created your first environment

Installing conda

Assuming your prompt is the above "(GVA-fastqc) tacc:~$" you can continue directly to the Read Mapping Tutorial or launch an idev session.

Bioinformatics Team (BioITeam) at the University of Texas

GVA2022 Day 1 Environment Checkup and Catchup

Logging in

.bashrc

conda