Title: Linux fundamentals  
Owner: Anna Battenhouse
Creator: Anna Battenhouse May 13, 2014
Last Changed by: Anna Battenhouse Jun 01, 2024
Tiny Link: (useful for email) https://cloud.wikis.utexas.edu/wiki/x/hAA5Aw
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Core NGS Tools (12)
    Page: Analysis using BEDTools
    Page: Copy of good Alignment workflow
    Page: Core NGS Resources
    Home page: Core NGS Tools Home
    Page: File systems and transferring files
    Page: Getting started at TACC
    Page: More Alignment exercises
    Page: Old stuff
    Page: Pre-processing raw sequences
    Page: Running batch jobs at TACC
    Page: The Basic Alignment Workflow
    Page: Working with FASTQ files
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Jun 01, 2024 23:42 Anna Battenhouse View Changes
Jun 01, 2024 18:22 Anna Battenhouse View Changes
May 28, 2024 16:27 Anna Battenhouse View Changes
May 28, 2024 14:53 Anna Battenhouse View Changes
May 28, 2024 14:26 Anna Battenhouse  
Outgoing Links
External Links (17)
    mywiki.wooledge.org/BashPitfalls
    https://utexas.atlassian.net/wiki/display/CbrsIntermUnix/
    https://winscp.net/eng/index.php
    https://utexas.atlassian.net/wiki/display/CbrsIntroUnix/
    mywiki.wooledge.org/BashGuide
    https://docs.microsoft.com/en-us/windows/wsl/install-win10
    www.chiark.greenend.org.uk/~sgtatham/putty/download.html
    www.atmos.albany.edu/daes/atmclasses/atm350/vi_cheat_sheet.…
    mywiki.wooledge.org/BashFAQ
    https://www.gnu.org/software/emacs/refcards/pdf/refcard.pdf
    ryanstutorials.net/bash-scripting-tutorial/
    https://www.gnu.org/software/bash/manual/html_node/Bash-Con…
    www.activestate.com/komodo-edit/downloads
    https://notepad-plus-plus.org/downloads/
    https://www.asciitable.com/
    https://cloud.wikis.utexas.edu/wiki/spaces/CbrsIntroUnix/pa…
    https://unix.stackexchange.com/questions/209123/understandi…
Introduction to Unix/Linux (1)     Page: Some Linux commands
Core NGS Tools (2)     Page: Decimal and Hexadecimal
    Page: Linux fundamentals