M.cavernosa example pipeline

Example of data processing and analyses

Instructions

Instructions in the following text files:

1. mcav_nov2018_reads2bams.txt
2. mcav_nov2018_qual_pca_admix.txt
3. mcav_nov2018_Fst_LD.txt
4. mcav_nov2018_AFS.txt

Reference genome files:

Mcav_genome_03012018.tgz

Mcavernosa_gene_annotation.tar.gz