QIIme2
Overview
Learning objectives
- install QIIme2
Installation
THIS PAGE IS UNDER CONSTRUCTION AND IS NOT COMPLETE
FOLLOWING BLOCK DOES NOT RESULT IN A WORKING QIIMME2
#miniconda install mkdir -p $WORK/src/miniconda cd $WORK/src/miniconda wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh bash Miniconda3-latest-Linux-x86_64.sh # hold enter to scroll through user agreement # enter yes to agree to user agreement # press enter to agree to installation location $HOME/miniconda3 # press enter to not change your pythonpath variable logout ssh back into tacc cd $WORK/src wget https://data.qiime2.org/distro/core/qiime2-2020.2-py36-linux-conda.yml $HOME/miniconda3/bin/conda env create -n qiime2-2020.2 --file qiime2-2020.2-py36-linux-conda.yml
Tutorial:
https://github.com/LangilleLab/microbiome_helper/wiki/Amplicon-SOP-v2-(qiime2-2020.2)
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