Small-rna data analysis
- Arindam Bhattacharya
Owned by Arindam Bhattacharya
- Running ABI small-rna pipeline on TACC
- About the pipeline- how it works, advantages and disadvantages.
- Issues faced - restrictions on data, setting up configuration files, things we tried.
- Parallelizing the pipeline (way around interactive processes)
- Results
- Quantifying mature miRNAs from small-rna pipeline results
- Our scripts and what they do Normalization ??* Conversion of pipeline output to SAM format ( viewing the reads in base space)
- Looking for novel miRNA, siRNA, moRNA
- Generating coverage graphs around each miRNA
- Could we get Rodney to talk about how they identified that antisense miRNA?
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